STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP94006.1Anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family. (163 aa)    
Predicted Functional Partners:
SDP42583.1
Serine/threonine-protein kinase RsbW.
  
 0.935
SDP88585.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
 
 
  0.913
SDP88609.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
 
 
  0.875
SDP88597.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
 
 
  0.874
SDP88621.1
Virulence factor Mce family protein.
 
  0.822
SDP88672.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
 
  0.812
SDP88641.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
 
  0.808
SDP88630.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
 
  0.807
SDP88652.1
Virulence factor Mce family protein.
 
  0.803
SDP88662.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
  
  0.773
Your Current Organism:
Actinopolyspora xinjiangensis
NCBI taxonomy Id: 405564
Other names: A. xinjiangensis, Actinopolyspora xinjiangensis Guan et al. 2011, CCTCC AA 209080, DSM 46732, KCTC 19656, strain TRM 40136
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.