STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP94874.1Site-specific recombinase XerD. (472 aa)    
Predicted Functional Partners:
SDO94326.1
Transcriptional regulator, AlpA family.
 
   
 0.813
SDP87856.1
Transcriptional regulator, AlpA family.
 
   
 0.813
SDO94359.1
Hypothetical protein.
  
     0.709
SDP76851.1
Protein of unknown function.
  
     0.648
SDP87911.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
  
     0.646
SDP76811.1
Protein of unknown function.
  
     0.607
SDP95784.1
Hypothetical protein.
  
     0.574
SDP87876.1
Bifunctional DNA primase/polymerase, N-terminal.
 
     0.547
SDP48816.1
Protein of unknown function.
  
     0.534
SDP64255.1
Hypothetical protein.
  
     0.522
Your Current Organism:
Actinopolyspora xinjiangensis
NCBI taxonomy Id: 405564
Other names: A. xinjiangensis, Actinopolyspora xinjiangensis Guan et al. 2011, CCTCC AA 209080, DSM 46732, KCTC 19656, strain TRM 40136
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.