STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF94741.1Protein of unknown function. (102 aa)    
Predicted Functional Partners:
SDF94507.1
Bacteroides conjugative transposon TraK protein.
 
     0.951
SDF94671.1
Bacteroides conjugation system ATPase, TraG family.
 
     0.951
SDF94455.1
Bacteroides conjugative transposon TraM protein.
 
     0.949
SDF94536.1
Hypothetical protein.
 
     0.949
SDF94429.1
Bacteroides conjugative transposon TraN protein.
 
     0.945
SDF94878.1
Relaxase/Mobilisation nuclease domain-containing protein.
 
     0.856
SDF94836.1
Chromosome partitioning protein.
 
     0.855
SDF94482.1
Hypothetical protein.
       0.792
SDF94563.1
Hypothetical protein.
       0.792
SDF94591.1
Hypothetical protein.
       0.792
Your Current Organism:
Pedobacter terrae
NCBI taxonomy Id: 405671
Other names: DSM 17933, KCTC 12762, Pedobacter sp. DS-57, Pedobacter terrae Yoon et al. 2007, strain DS-57
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.