STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF96124.1Phage integrase SAM-like domain-containing protein; Belongs to the 'phage' integrase family. (433 aa)    
Predicted Functional Partners:
SDF94536.1
Hypothetical protein.
  
     0.732
SDF94878.1
Relaxase/Mobilisation nuclease domain-containing protein.
  
     0.725
SDF94836.1
Chromosome partitioning protein.
  
     0.694
SDF94455.1
Bacteroides conjugative transposon TraM protein.
  
     0.681
SDF94997.1
Hypothetical protein.
  
     0.674
SDH52674.1
Hypothetical protein.
  
     0.670
SDH54455.1
Relaxase/Mobilisation nuclease domain-containing protein.
  
     0.640
SDF94371.1
Type IV secretory system Conjugative DNA transfer.
  
     0.629
SDF94969.1
Toprim-like.
  
     0.616
SDH52767.1
Bacteroides conjugative transposon TraM protein.
  
     0.609
Your Current Organism:
Pedobacter terrae
NCBI taxonomy Id: 405671
Other names: DSM 17933, KCTC 12762, Pedobacter sp. DS-57, Pedobacter terrae Yoon et al. 2007, strain DS-57
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.