Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDF96520.1 | SDF96716.1 | SAMN05421827_102268 | SAMN05421827_102272 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | Prephenate dehydratase. | 0.766 |
SDF96520.1 | SDF96750.1 | SAMN05421827_102268 | SAMN05421827_102273 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | 0.991 |
SDF96520.1 | SDF97733.1 | SAMN05421827_102268 | SAMN05421827_102296 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 3-dehydroquinate synthase. | 0.863 |
SDF96520.1 | SDG09770.1 | SAMN05421827_102268 | SAMN05421827_103215 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | Shikimate dehydrogenase. | 0.903 |
SDF96520.1 | SDG30977.1 | SAMN05421827_102268 | SAMN05421827_10585 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | Chorismate mutase. | 0.877 |
SDF96520.1 | SDG78484.1 | SAMN05421827_102268 | SAMN05421827_11139 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | Prephenate dehydrogenase (NADP+). | 0.549 |
SDF96520.1 | aroA | SAMN05421827_102268 | SAMN05421827_102274 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.991 |
SDF96520.1 | aroC | SAMN05421827_102268 | SAMN05421827_102275 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.949 |
SDF96520.1 | aroK | SAMN05421827_102268 | SAMN05421827_11537 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.962 |
SDF96520.1 | cmk | SAMN05421827_102268 | SAMN05421827_108209 | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | Cytidylate kinase. | 0.521 |
SDF96716.1 | SDF96520.1 | SAMN05421827_102272 | SAMN05421827_102268 | Prephenate dehydratase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.766 |
SDF96716.1 | SDF96750.1 | SAMN05421827_102272 | SAMN05421827_102273 | Prephenate dehydratase. | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | 0.990 |
SDF96716.1 | SDF97733.1 | SAMN05421827_102272 | SAMN05421827_102296 | Prephenate dehydratase. | 3-dehydroquinate synthase. | 0.572 |
SDF96716.1 | SDG09770.1 | SAMN05421827_102272 | SAMN05421827_103215 | Prephenate dehydratase. | Shikimate dehydrogenase. | 0.736 |
SDF96716.1 | SDG30977.1 | SAMN05421827_102272 | SAMN05421827_10585 | Prephenate dehydratase. | Chorismate mutase. | 0.771 |
SDF96716.1 | SDG78484.1 | SAMN05421827_102272 | SAMN05421827_11139 | Prephenate dehydratase. | Prephenate dehydrogenase (NADP+). | 0.906 |
SDF96716.1 | aroA | SAMN05421827_102272 | SAMN05421827_102274 | Prephenate dehydratase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.863 |
SDF96716.1 | aroC | SAMN05421827_102272 | SAMN05421827_102275 | Prephenate dehydratase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.848 |
SDF96716.1 | aroK | SAMN05421827_102272 | SAMN05421827_11537 | Prephenate dehydratase. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.671 |
SDF96716.1 | cmk | SAMN05421827_102272 | SAMN05421827_108209 | Prephenate dehydratase. | Cytidylate kinase. | 0.576 |
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