STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF98215.1DNA-binding response regulator, LytR/AlgR family. (231 aa)    
Predicted Functional Partners:
SDF63575.1
Two component regulator propeller.
  
  0.843
SDF91505.1
Histidine kinase.
  
  0.825
SDH68413.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
  0.825
SDG38009.1
Histidine kinase.
  
  0.824
SDH21917.1
Histidine kinase.
  
  0.824
SDF89842.1
Histidine kinase.
  
  0.823
SDG25024.1
Histidine kinase.
  
  0.823
SDH26186.1
Histidine kinase.
  
  0.823
SDG77941.1
Histidine kinase.
  
  0.822
SDH17781.1
Histidine kinase.
  
  0.821
Your Current Organism:
Pedobacter terrae
NCBI taxonomy Id: 405671
Other names: DSM 17933, KCTC 12762, Pedobacter sp. DS-57, Pedobacter terrae Yoon et al. 2007, strain DS-57
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.