STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG08506.1Hypothetical protein. (428 aa)    
Predicted Functional Partners:
SDG08475.1
Hypothetical protein.
 
     0.901
SDG08446.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
  0.751
SDG08529.1
Peroxiredoxin.
       0.674
SDH22155.1
TonB family C-terminal domain-containing protein.
  
 
  0.603
SDG22150.1
Tetratricopeptide repeat-containing protein.
  
     0.574
SDG85799.1
Hypothetical protein.
  
     0.479
SDF71249.1
Beta-lactamase enzyme family protein.
  
     0.478
SDG75439.1
Iron complex outermembrane recepter protein.
  
   0.447
SDH60124.1
Hypothetical protein.
  
     0.446
SDH02976.1
Protein of unknown function.
  
     0.430
Your Current Organism:
Pedobacter terrae
NCBI taxonomy Id: 405671
Other names: DSM 17933, KCTC 12762, Pedobacter sp. DS-57, Pedobacter terrae Yoon et al. 2007, strain DS-57
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.