STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG05884.1Flagellum-specific peptidoglycan hydrolase FlgJ. (225 aa)    
Predicted Functional Partners:
SDG62333.1
Uncharacterized conserved protein YgiM, contains N-terminal SH3 domain, DUF1202 family.
  
 
 0.920
SDG05867.1
Flagellum-specific peptidoglycan hydrolase FlgJ.
 
   
0.790
SDG61870.1
Protein of unknown function.
  
     0.730
SDG18996.1
Beta-glucosidase.
    
 0.713
SDG77655.1
CubicO group peptidase, beta-lactamase class C family.
    
 0.713
SDG08099.1
N-acetylmuramoyl-L-alanine amidase.
    
 0.712
SDG05846.1
Hypothetical protein.
 
     0.694
SDG05903.1
Predicted O-methyltransferase YrrM.
       0.680
SDG05925.1
Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
       0.680
SDG94350.1
Por secretion system C-terminal sorting domain-containing protein.
 
  
 0.663
Your Current Organism:
Pedobacter terrae
NCBI taxonomy Id: 405671
Other names: DSM 17933, KCTC 12762, Pedobacter sp. DS-57, Pedobacter terrae Yoon et al. 2007, strain DS-57
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.