STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG42981.1Starch-binding associating with outer membrane. (640 aa)    
Predicted Functional Partners:
SDG43009.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.965
SDG42948.1
Protein of unknown function.
 
     0.955
SDH33199.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.813
SDF98327.1
Glycosyl hydrolase family 76.
  
 
   0.774
SDH35310.1
Protein of unknown function.
 
  
  0.771
SDG42923.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
 
  
  0.728
SDF92873.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.705
SDG74558.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.682
SDH64234.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.673
SDH64259.1
Starch-binding associating with outer membrane.
  
 
   0.653
Your Current Organism:
Pedobacter terrae
NCBI taxonomy Id: 405671
Other names: DSM 17933, KCTC 12762, Pedobacter sp. DS-57, Pedobacter terrae Yoon et al. 2007, strain DS-57
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