STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG59417.1Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain. (321 aa)    
Predicted Functional Partners:
SDG59443.1
Tat (twin-arginine translocation) pathway signal sequence.
 
     0.921
SDG59496.1
Hydroxypyruvate isomerase.
 
     0.880
SDG59466.1
Thiamine biosynthesis lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
 
     0.783
SDF68203.1
Dimethylhistidine N-methyltransferase.
  
 
 0.592
SDF92655.1
alpha-L-rhamnosidase.
 
 
   0.555
SDG22771.1
Gliding motility-associated lipoprotein GldK.
  
     0.536
SDG75007.1
Chlorophyllase.
  
     0.508
SDG62295.1
Protein of unknown function.
  
     0.483
SDG39970.1
alpha-L-rhamnosidase.
   
   0.468
SDF77922.1
Hypothetical protein.
  
     0.460
Your Current Organism:
Pedobacter terrae
NCBI taxonomy Id: 405671
Other names: DSM 17933, KCTC 12762, Pedobacter sp. DS-57, Pedobacter terrae Yoon et al. 2007, strain DS-57
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.