Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDF81863.1 | coaE | SAMN05421827_101650 | SAMN05421827_10813 | Endonuclease-8. | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.606 |
SDF81863.1 | polA | SAMN05421827_101650 | SAMN05421827_103240 | Endonuclease-8. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.969 |
SDG56824.1 | SDG56882.1 | SAMN05421827_10812 | SAMN05421827_10814 | Putative mRNA 3-end processing factor. | YbbR domain-containing protein. | 0.762 |
SDG56824.1 | SDG56915.1 | SAMN05421827_10812 | SAMN05421827_10815 | Putative mRNA 3-end processing factor. | Preprotein translocase subunit YajC. | 0.590 |
SDG56824.1 | SDG56976.1 | SAMN05421827_10812 | SAMN05421827_10817 | Putative mRNA 3-end processing factor. | N utilization substance protein B; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.477 |
SDG56824.1 | coaE | SAMN05421827_10812 | SAMN05421827_10813 | Putative mRNA 3-end processing factor. | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.727 |
SDG56824.1 | polA | SAMN05421827_10812 | SAMN05421827_103240 | Putative mRNA 3-end processing factor. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.685 |
SDG56882.1 | SDG56824.1 | SAMN05421827_10814 | SAMN05421827_10812 | YbbR domain-containing protein. | Putative mRNA 3-end processing factor. | 0.762 |
SDG56882.1 | SDG56915.1 | SAMN05421827_10814 | SAMN05421827_10815 | YbbR domain-containing protein. | Preprotein translocase subunit YajC. | 0.644 |
SDG56882.1 | SDG56976.1 | SAMN05421827_10814 | SAMN05421827_10817 | YbbR domain-containing protein. | N utilization substance protein B; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.623 |
SDG56882.1 | coaE | SAMN05421827_10814 | SAMN05421827_10813 | YbbR domain-containing protein. | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.826 |
SDG56915.1 | SDG56824.1 | SAMN05421827_10815 | SAMN05421827_10812 | Preprotein translocase subunit YajC. | Putative mRNA 3-end processing factor. | 0.590 |
SDG56915.1 | SDG56882.1 | SAMN05421827_10815 | SAMN05421827_10814 | Preprotein translocase subunit YajC. | YbbR domain-containing protein. | 0.644 |
SDG56915.1 | SDG56976.1 | SAMN05421827_10815 | SAMN05421827_10817 | Preprotein translocase subunit YajC. | N utilization substance protein B; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.724 |
SDG56915.1 | SDH73476.1 | SAMN05421827_10815 | SAMN05421827_1541 | Preprotein translocase subunit YajC. | Amino acid adenylation domain-containing protein. | 0.433 |
SDG56915.1 | coaE | SAMN05421827_10815 | SAMN05421827_10813 | Preprotein translocase subunit YajC. | dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.644 |
SDG56915.1 | polA | SAMN05421827_10815 | SAMN05421827_103240 | Preprotein translocase subunit YajC. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.423 |
SDG56976.1 | SDG56824.1 | SAMN05421827_10817 | SAMN05421827_10812 | N utilization substance protein B; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | Putative mRNA 3-end processing factor. | 0.477 |
SDG56976.1 | SDG56882.1 | SAMN05421827_10817 | SAMN05421827_10814 | N utilization substance protein B; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | YbbR domain-containing protein. | 0.623 |
SDG56976.1 | SDG56915.1 | SAMN05421827_10817 | SAMN05421827_10815 | N utilization substance protein B; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | Preprotein translocase subunit YajC. | 0.724 |
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