STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG87603.1Hypothetical protein. (280 aa)    
Predicted Functional Partners:
SDG87650.1
Signal transduction histidine kinase.
       0.672
SDG87623.1
His Kinase A (phospho-acceptor) domain-containing protein.
       0.656
SDG87701.1
Chemotaxis protein methyltransferase CheR.
       0.620
SDG87731.1
Two-component system, chemotaxis family, response regulator CheB.
       0.620
gltX
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
       0.595
SDG79784.1
Hypothetical protein.
  
     0.591
SDG87676.1
Response regulator receiver domain-containing protein.
       0.546
SDG87768.1
Two-component system, cell cycle response regulator DivK.
       0.513
SDG87544.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
       0.499
SDG87520.1
DinB superfamily protein.
       0.452
Your Current Organism:
Pedobacter terrae
NCBI taxonomy Id: 405671
Other names: DSM 17933, KCTC 12762, Pedobacter sp. DS-57, Pedobacter terrae Yoon et al. 2007, strain DS-57
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.