STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG93973.1Starch-binding associating with outer membrane. (471 aa)    
Predicted Functional Partners:
SDG94005.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.955
SDG93920.1
Glucosylceramidase; Belongs to the glycosyl hydrolase 30 family.
 
  
  0.783
SDG93396.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.774
SDG30521.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.771
SDG73463.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.769
SDG93948.1
Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.
 
  
  0.733
SDH39009.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.647
SDH60865.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.635
SDH60944.1
Glucosylceramidase; Belongs to the glycosyl hydrolase 30 family.
 
  
  0.632
SDH17490.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.628
Your Current Organism:
Pedobacter terrae
NCBI taxonomy Id: 405671
Other names: DSM 17933, KCTC 12762, Pedobacter sp. DS-57, Pedobacter terrae Yoon et al. 2007, strain DS-57
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.