STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH04566.1N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA. (380 aa)    
Predicted Functional Partners:
SDG61829.1
Bacillithiol biosynthesis deacetylase BshB1.
  
 
  0.968
bshC
Bacillithiol biosynthesis cysteine-adding enzyme BshC; Belongs to the BshC family.
  
  
  0.790
SDH02921.1
Putative bacilliredoxin, YphP/YqiW family; Belongs to the UPF0403 family.
  
     0.765
tilS
tRNA(Ile)-lysidine synthase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.
  
    0.581
SDH04151.1
Thioredoxin reductase (NADPH).
  
     0.579
SDH04609.1
Hypothetical protein.
       0.575
SDG44197.1
Protein of unknown function.
  
     0.558
SDG85895.1
Protein of unknown function.
  
     0.546
SDG52626.1
Trehalose 6-phosphate synthase/phosphatase.
  
 0.537
SDG61643.1
Trehalose 6-phosphate synthase/phosphatase.
  
 0.537
Your Current Organism:
Pedobacter terrae
NCBI taxonomy Id: 405671
Other names: DSM 17933, KCTC 12762, Pedobacter sp. DS-57, Pedobacter terrae Yoon et al. 2007, strain DS-57
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.