STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH39887.1Starch-binding associating with outer membrane. (545 aa)    
Predicted Functional Partners:
SDH39936.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.944
atpE
ATP synthase F0 subcomplex C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
 0.927
SDH39849.1
Hypothetical protein.
       0.773
SDG64654.1
Iron complex outermembrane recepter protein.
 
     0.736
SDG30726.1
Iron complex outermembrane recepter protein.
 
     0.719
SDH48050.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.690
SDG34568.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.685
SDH40059.1
DUF1680 family protein.
 
     0.638
SDH48009.1
Starch-binding associating with outer membrane.
  
     0.618
SDG72948.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.601
Your Current Organism:
Pedobacter terrae
NCBI taxonomy Id: 405671
Other names: DSM 17933, KCTC 12762, Pedobacter sp. DS-57, Pedobacter terrae Yoon et al. 2007, strain DS-57
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.