STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH48306.1Starch-binding associating with outer membrane. (627 aa)    
Predicted Functional Partners:
SDH48347.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.959
SDH48276.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.954
SDH48159.1
Carbohydrate binding domain-containing protein.
 
  
  0.922
SDH48199.1
Protein of unknown function.
 
     0.916
SDH48238.1
Starch-binding associating with outer membrane.
 
    
0.799
SDH40158.1
Protein of unknown function.
  
  
  0.737
SDH48050.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.717
SDH40129.1
Hypothetical protein.
  
  
  0.671
SDH48009.1
Starch-binding associating with outer membrane.
  
     0.663
SDG74558.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.655
Your Current Organism:
Pedobacter terrae
NCBI taxonomy Id: 405671
Other names: DSM 17933, KCTC 12762, Pedobacter sp. DS-57, Pedobacter terrae Yoon et al. 2007, strain DS-57
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.