STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH71555.1Ornithine cyclodeaminase. (322 aa)    
Predicted Functional Partners:
SDH71578.1
Cysteine synthase A.
 
 
 0.917
SDH71632.1
Diaminobutyrate-2-oxoglutarate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
  0.803
SDH71526.1
Amino acid adenylation domain-containing protein.
 
   
 0.786
SDG73150.1
4-hydroxyproline epimerase; Belongs to the proline racemase family.
 
  
 0.732
SDH71606.1
Cupin-like domain-containing protein.
 
     0.682
SDH73106.1
HxxPF-repeated domain-containing protein.
 
   
 0.667
SDF62143.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
     
 0.662
SDH73476.1
Amino acid adenylation domain-containing protein.
 
   
 0.650
SDH71657.1
Non-ribosomal peptide synthase domain TIGR01720.
 
     0.629
SDH68302.1
Surfactin synthase thioesterase subunit.
 
     0.594
Your Current Organism:
Pedobacter terrae
NCBI taxonomy Id: 405671
Other names: DSM 17933, KCTC 12762, Pedobacter sp. DS-57, Pedobacter terrae Yoon et al. 2007, strain DS-57
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