STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG82628.1Peptidase family S41. (741 aa)    
Predicted Functional Partners:
SDG74298.1
Starch-binding associating with outer membrane.
  
  0.577
SDH58802.1
Starch-binding associating with outer membrane.
  
  0.542
SDF92904.1
Starch-binding associating with outer membrane.
  
  0.521
SDG75100.1
Starch-binding associating with outer membrane.
  
  0.486
SDG69055.1
Starch-binding associating with outer membrane.
  
  0.485
SDF68378.1
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
  0.469
SDG82659.1
Hypothetical protein.
       0.423
SDF66642.1
Astacin (Peptidase family M12A).
   
  0.418
SDF67186.1
SusD family protein.
   
  0.418
SDF78031.1
Conserved repeat domain-containing protein/gliding motility-associated C-terminal domain-containing protein.
   
  0.418
Your Current Organism:
Pedobacter terrae
NCBI taxonomy Id: 405671
Other names: DSM 17933, KCTC 12762, Pedobacter sp. DS-57, Pedobacter terrae Yoon et al. 2007, strain DS-57
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.