STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC59062.1DNA-binding transcriptional regulator, CsgD family. (330 aa)    
Predicted Functional Partners:
SMD17774.1
Regulatory protein, luxR family.
 
  0.849
SMC59311.1
Predicted ATPase.
 
  0.824
SMD19249.1
Regulatory protein, luxR family.
 
  0.786
SMD17778.1
ATP-, maltotriose-and DNA-dependent transcriptional regulator MalT.
 
 0.781
SMC88803.1
Regulatory protein, luxR family.
 
  0.775
SMD20682.1
Regulatory protein, luxR family.
 
  0.772
SMC77184.1
Regulatory protein, luxR family.
  
  0.734
SMC77733.1
Regulatory protein, luxR family.
  
  0.734
SMC96663.1
Predicted ATPase.
  
  0.734
SMD01493.1
AAA ATPase domain-containing protein.
  
  0.734
Your Current Organism:
Lentzea albidocapillata
NCBI taxonomy Id: 40571
Other names: ATCC 51859, CCUG 48294, CIP 104842, DSM 44073, IFO 15855, IMMIB D-958, IMSNU 21253, JCM 9732, L. albidocapillata, Lentzea albidicapillata, NBRC 100372, NBRC 15855, NRRL B-24057, Saccharothrix albidicapillata, Saccharothrix albidocapillata
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.