STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC68530.1Protein N-acetyltransferase, RimJ/RimL family. (188 aa)    
Predicted Functional Partners:
SMC68566.1
Protein of unknown function.
       0.811
SMC68522.1
Protein of unknown function.
       0.799
SMC68546.1
Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED.
       0.791
SMC59266.1
Acetyl/propionyl-CoA carboxylase, alpha subunit.
    
  0.711
SMD12670.1
Glutamate synthase (NADPH/NADH) large chain.
   
 
 0.706
SMC65932.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.689
SMC68591.1
acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein.
    
  0.572
SMC68511.1
Hypothetical protein.
       0.558
SMC68504.1
PPE family protein.
       0.539
SMC68497.1
EspG family protein.
       0.534
Your Current Organism:
Lentzea albidocapillata
NCBI taxonomy Id: 40571
Other names: ATCC 51859, CCUG 48294, CIP 104842, DSM 44073, IFO 15855, IMMIB D-958, IMSNU 21253, JCM 9732, L. albidocapillata, Lentzea albidicapillata, NBRC 100372, NBRC 15855, NRRL B-24057, Saccharothrix albidicapillata, Saccharothrix albidocapillata
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