STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC77554.1TrkA domain protein. (157 aa)    
Predicted Functional Partners:
SMC77561.1
Potassium/proton antiporter membrane subunit, CPA2 family.
 
  
 0.965
SMD24865.1
Monovalent cation:H+ antiporter-2, CPA2 family.
 
  
 0.852
SMC77566.1
Hypothetical protein.
       0.787
SMC77526.1
Two-component system, NarL family, sensor histidine kinase UhpB.
       0.777
SMC77548.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
       0.777
SMC77568.1
Hypothetical protein.
       0.771
SMC77521.1
Hypothetical protein.
       0.408
Your Current Organism:
Lentzea albidocapillata
NCBI taxonomy Id: 40571
Other names: ATCC 51859, CCUG 48294, CIP 104842, DSM 44073, IFO 15855, IMMIB D-958, IMSNU 21253, JCM 9732, L. albidocapillata, Lentzea albidicapillata, NBRC 100372, NBRC 15855, NRRL B-24057, Saccharothrix albidicapillata, Saccharothrix albidocapillata
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