STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC78358.1Glycosyl hydrolases family 2, TIM barrel domain; Belongs to the glycosyl hydrolase 2 family. (1030 aa)    
Predicted Functional Partners:
SMC92426.1
alpha-L-rhamnosidase.
 
 0.698
SMC78968.1
NPCBM-associated, NEW3 domain of alpha-galactosidase.
 
   
 0.549
SMC78342.1
Hypothetical protein.
       0.544
SMC76760.1
Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain.
    
 0.513
SMC76411.1
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
 
 0.499
SMC97087.1
Tagatose 6-phosphate kinase; Belongs to the carbohydrate kinase PfkB family.
   
    0.499
SMD19817.1
1-phosphofructokinase.
   
    0.499
SMD01459.1
Alpha-1,2-mannosidase, putative.
 
     0.466
SMD22628.1
Hexosaminidase.
 
 0.466
SMC93064.1
Carbohydrate binding module (family 6); Belongs to the glycosyl hydrolase 43 family.
 
  
  0.465
Your Current Organism:
Lentzea albidocapillata
NCBI taxonomy Id: 40571
Other names: ATCC 51859, CCUG 48294, CIP 104842, DSM 44073, IFO 15855, IMMIB D-958, IMSNU 21253, JCM 9732, L. albidocapillata, Lentzea albidicapillata, NBRC 100372, NBRC 15855, NRRL B-24057, Saccharothrix albidicapillata, Saccharothrix albidocapillata
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.