STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC78710.1Transcriptional regulator, PaaX family. (266 aa)    
Predicted Functional Partners:
SMC78692.1
Hypothetical protein.
 
     0.756
SMC78655.1
fatty-acyl-CoA synthase.
 
     0.687
SMC78694.1
3-oxoacyl-[acyl-carrier protein] reductase.
 
     0.653
SMC78665.1
Predicted arabinose efflux permease, MFS family.
 
     0.616
SMC78678.1
Acyl dehydratase.
       0.558
SMD18221.1
Rhodanese-related sulfurtransferase.
   
    0.489
cobB-2
NAD-dependent protein deacetylase, SIR2 family; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
   
    0.485
SMD22887.1
NAD-dependent protein deacetylase, SIR2 family.
   
    0.485
SMD25099.1
NAD-dependent deacetylase.
   
    0.485
SMC93048.1
Poly(3-hydroxybutyrate) depolymerase.
 
     0.408
Your Current Organism:
Lentzea albidocapillata
NCBI taxonomy Id: 40571
Other names: ATCC 51859, CCUG 48294, CIP 104842, DSM 44073, IFO 15855, IMMIB D-958, IMSNU 21253, JCM 9732, L. albidocapillata, Lentzea albidicapillata, NBRC 100372, NBRC 15855, NRRL B-24057, Saccharothrix albidicapillata, Saccharothrix albidocapillata
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