Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SMC55788.1 | SMC85411.1 | SAMN05660733_00493 | SAMN05660733_02095 | RNA processing exonuclease, beta-lactamase fold, Cft2 family. | WD40 repeat. | 0.927 |
SMC55788.1 | SMD02704.1 | SAMN05660733_00493 | SAMN05660733_03467 | RNA processing exonuclease, beta-lactamase fold, Cft2 family. | Hypothetical protein. | 0.499 |
SMC55788.1 | SMD24566.1 | SAMN05660733_00493 | SAMN05660733_07740 | RNA processing exonuclease, beta-lactamase fold, Cft2 family. | ATP-dependent DNA helicase, RecQ family. | 0.504 |
SMC55788.1 | rpoA | SAMN05660733_00493 | SAMN05660733_00916 | RNA processing exonuclease, beta-lactamase fold, Cft2 family. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.912 |
SMC55788.1 | rpoB | SAMN05660733_00493 | SAMN05660733_00875 | RNA processing exonuclease, beta-lactamase fold, Cft2 family. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.954 |
SMC55788.1 | rpoZ | SAMN05660733_00493 | SAMN05660733_05830 | RNA processing exonuclease, beta-lactamase fold, Cft2 family. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.941 |
SMC59036.1 | SMC85411.1 | SAMN05660733_00629 | SAMN05660733_02095 | Protein-tyrosine phosphatase. | WD40 repeat. | 0.685 |
SMC59036.1 | alaS | SAMN05660733_00629 | SAMN05660733_05869 | Protein-tyrosine phosphatase. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.523 |
SMC83253.1 | SMC85411.1 | SAMN05660733_01947 | SAMN05660733_02095 | Conserved hypothetical protein. | WD40 repeat. | 0.863 |
SMC83253.1 | SMD21524.1 | SAMN05660733_01947 | SAMN05660733_06443 | Conserved hypothetical protein. | Hypothetical protein. | 0.998 |
SMC85411.1 | SMC55788.1 | SAMN05660733_02095 | SAMN05660733_00493 | WD40 repeat. | RNA processing exonuclease, beta-lactamase fold, Cft2 family. | 0.927 |
SMC85411.1 | SMC59036.1 | SAMN05660733_02095 | SAMN05660733_00629 | WD40 repeat. | Protein-tyrosine phosphatase. | 0.685 |
SMC85411.1 | SMC83253.1 | SAMN05660733_02095 | SAMN05660733_01947 | WD40 repeat. | Conserved hypothetical protein. | 0.863 |
SMC85411.1 | SMD02704.1 | SAMN05660733_02095 | SAMN05660733_03467 | WD40 repeat. | Hypothetical protein. | 0.695 |
SMC85411.1 | SMD21524.1 | SAMN05660733_02095 | SAMN05660733_06443 | WD40 repeat. | Hypothetical protein. | 0.943 |
SMC85411.1 | SMD24566.1 | SAMN05660733_02095 | SAMN05660733_07740 | WD40 repeat. | ATP-dependent DNA helicase, RecQ family. | 0.924 |
SMC85411.1 | alaS | SAMN05660733_02095 | SAMN05660733_05869 | WD40 repeat. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.923 |
SMC85411.1 | rpoA | SAMN05660733_02095 | SAMN05660733_00916 | WD40 repeat. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.717 |
SMC85411.1 | rpoB | SAMN05660733_02095 | SAMN05660733_00875 | WD40 repeat. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.711 |
SMC85411.1 | rpoZ | SAMN05660733_02095 | SAMN05660733_05830 | WD40 repeat. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.720 |
page 1 of 4