STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMD14056.1tRNA-splicing ligase RtcB. (392 aa)    
Predicted Functional Partners:
SMC53803.1
Hypothetical protein.
  
    0.848
SMD14050.1
Hypothetical protein.
       0.768
SMD14063.1
Hypothetical protein.
       0.571
SMD14072.1
Hypothetical protein.
       0.570
SMC87812.1
Hypothetical protein.
  
    0.556
SMC88254.1
ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.
   
 0.546
SMD03842.1
Superfamily II DNA and RNA helicase.
   
 0.546
SMD22193.1
Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family.
   
 0.546
SMD14046.1
Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD.
       0.506
kptA
Putative RNA 2'-phosphotransferase; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase.
 
   
 0.491
Your Current Organism:
Lentzea albidocapillata
NCBI taxonomy Id: 40571
Other names: ATCC 51859, CCUG 48294, CIP 104842, DSM 44073, IFO 15855, IMMIB D-958, IMSNU 21253, JCM 9732, L. albidocapillata, Lentzea albidicapillata, NBRC 100372, NBRC 15855, NRRL B-24057, Saccharothrix albidicapillata, Saccharothrix albidocapillata
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