STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMD14266.1Hypothetical protein. (317 aa)    
Predicted Functional Partners:
SMD14269.1
Protein of unknown function.
 
     0.814
SMD20733.1
Hypothetical protein.
  
  
  0.774
SMD07263.1
Pectate lyase superfamily protein.
  
 
  0.765
SMD16055.1
Dehydratase.
  
     0.757
SMD20490.1
Hypothetical protein.
  
  
  0.754
SMC70903.1
Regulatory protein, luxR family.
  
     0.723
SMD20671.1
Peptidase family S41.
  
   0.720
SMC69790.1
Hypothetical protein.
  
  
  0.706
SMD14021.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
  
     0.677
SMD24772.1
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
  
     0.669
Your Current Organism:
Lentzea albidocapillata
NCBI taxonomy Id: 40571
Other names: ATCC 51859, CCUG 48294, CIP 104842, DSM 44073, IFO 15855, IMMIB D-958, IMSNU 21253, JCM 9732, L. albidocapillata, Lentzea albidicapillata, NBRC 100372, NBRC 15855, NRRL B-24057, Saccharothrix albidicapillata, Saccharothrix albidocapillata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.