Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SMC67201.1 | SMD15563.1 | SAMN05660733_00999 | SAMN05660733_04871 | ATP-dependent DNA helicase PcrA. | DNA helicase IV. | 0.592 |
SMC67201.1 | SMD22135.1 | SAMN05660733_00999 | SAMN05660733_06592 | ATP-dependent DNA helicase PcrA. | DNA helicase-2 / ATP-dependent DNA helicase PcrA; Belongs to the helicase family. UvrD subfamily. | 0.946 |
SMC67201.1 | SMD22137.1 | SAMN05660733_00999 | SAMN05660733_06593 | ATP-dependent DNA helicase PcrA. | Superfamily I DNA or RNA helicase; Belongs to the helicase family. UvrD subfamily. | 0.666 |
SMC67201.1 | rpoA | SAMN05660733_00999 | SAMN05660733_00916 | ATP-dependent DNA helicase PcrA. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.680 |
SMC67201.1 | rpoB | SAMN05660733_00999 | SAMN05660733_00875 | ATP-dependent DNA helicase PcrA. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.842 |
SMC67201.1 | rpoC | SAMN05660733_00999 | SAMN05660733_00876 | ATP-dependent DNA helicase PcrA. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.783 |
SMD15558.1 | SMD15563.1 | SAMN05660733_04870 | SAMN05660733_04871 | DNA-binding transcriptional regulator, MarR family. | DNA helicase IV. | 0.545 |
SMD15563.1 | SMC67201.1 | SAMN05660733_04871 | SAMN05660733_00999 | DNA helicase IV. | ATP-dependent DNA helicase PcrA. | 0.592 |
SMD15563.1 | SMD15558.1 | SAMN05660733_04871 | SAMN05660733_04870 | DNA helicase IV. | DNA-binding transcriptional regulator, MarR family. | 0.545 |
SMD15563.1 | SMD17333.1 | SAMN05660733_04871 | SAMN05660733_05106 | DNA helicase IV. | MerR HTH family regulatory protein. | 0.507 |
SMD15563.1 | SMD22135.1 | SAMN05660733_04871 | SAMN05660733_06592 | DNA helicase IV. | DNA helicase-2 / ATP-dependent DNA helicase PcrA; Belongs to the helicase family. UvrD subfamily. | 0.638 |
SMD15563.1 | SMD22137.1 | SAMN05660733_04871 | SAMN05660733_06593 | DNA helicase IV. | Superfamily I DNA or RNA helicase; Belongs to the helicase family. UvrD subfamily. | 0.638 |
SMD15563.1 | rpoA | SAMN05660733_04871 | SAMN05660733_00916 | DNA helicase IV. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.888 |
SMD15563.1 | rpoB | SAMN05660733_04871 | SAMN05660733_00875 | DNA helicase IV. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.961 |
SMD15563.1 | rpoC | SAMN05660733_04871 | SAMN05660733_00876 | DNA helicase IV. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.957 |
SMD15563.1 | rpoZ | SAMN05660733_04871 | SAMN05660733_05830 | DNA helicase IV. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.913 |
SMD15563.1 | whiB-3 | SAMN05660733_04871 | SAMN05660733_01251 | DNA helicase IV. | Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.591 |
SMD17333.1 | SMD15563.1 | SAMN05660733_05106 | SAMN05660733_04871 | MerR HTH family regulatory protein. | DNA helicase IV. | 0.507 |
SMD17333.1 | rpoA | SAMN05660733_05106 | SAMN05660733_00916 | MerR HTH family regulatory protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.587 |
SMD17333.1 | rpoB | SAMN05660733_05106 | SAMN05660733_00875 | MerR HTH family regulatory protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.544 |
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