STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMD17533.1Transcriptional regulator, TetR family. (193 aa)    
Predicted Functional Partners:
SMD17537.1
TIGR03084 family protein.
 
     0.928
SMD17541.1
Protein of unknown function.
 
     0.926
SMD17563.1
Hypothetical protein.
 
     0.896
SMD17546.1
Hypothetical protein.
 
     0.891
SMD17555.1
Acetyl-CoA carboxylase, carboxyltransferase component.
 
     0.845
SMD17559.1
propionyl-CoA carboxylase alpha chain.
   
   0.834
SMD17551.1
acyl-CoA dehydrogenase.
 
     0.820
SMD17566.1
Proline-specific peptidase.
       0.753
SMD17531.1
Release factor glutamine methyltransferase.
       0.560
SMD17529.1
Hypothetical protein.
       0.556
Your Current Organism:
Lentzea albidocapillata
NCBI taxonomy Id: 40571
Other names: ATCC 51859, CCUG 48294, CIP 104842, DSM 44073, IFO 15855, IMMIB D-958, IMSNU 21253, JCM 9732, L. albidocapillata, Lentzea albidicapillata, NBRC 100372, NBRC 15855, NRRL B-24057, Saccharothrix albidicapillata, Saccharothrix albidocapillata
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