STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMD17537.1TIGR03084 family protein. (244 aa)    
Predicted Functional Partners:
SMD17533.1
Transcriptional regulator, TetR family.
 
     0.928
SMD17541.1
Protein of unknown function.
 
     0.911
SMD17546.1
Hypothetical protein.
 
     0.891
SMD17563.1
Hypothetical protein.
 
     0.883
SMD17559.1
propionyl-CoA carboxylase alpha chain.
 
     0.855
SMD17555.1
Acetyl-CoA carboxylase, carboxyltransferase component.
 
     0.840
SMD17551.1
acyl-CoA dehydrogenase.
 
     0.815
SMD17566.1
Proline-specific peptidase.
       0.753
SMC58503.1
Choline dehydrogenase.
    
  0.711
SMD18348.1
GMC oxidoreductase.
    
  0.711
Your Current Organism:
Lentzea albidocapillata
NCBI taxonomy Id: 40571
Other names: ATCC 51859, CCUG 48294, CIP 104842, DSM 44073, IFO 15855, IMMIB D-958, IMSNU 21253, JCM 9732, L. albidocapillata, Lentzea albidicapillata, NBRC 100372, NBRC 15855, NRRL B-24057, Saccharothrix albidicapillata, Saccharothrix albidocapillata
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.