STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMD18262.1NACHT domain-containing protein. (677 aa)    
Predicted Functional Partners:
SMD21071.1
Hypothetical protein.
 
     0.567
SMD02704.1
Hypothetical protein.
  
     0.563
SMD23097.1
Tetratricopeptide repeat-containing protein.
  
     0.563
SMC50223.1
Glucuronoarabinoxylan endo-1,4-beta-xylanase.
  
     0.550
SMD21066.1
NB-ARC domain-containing protein.
  
     0.526
SMC68853.1
Hypothetical protein.
  
     0.516
SMC93101.1
Hypothetical protein.
  
     0.503
SMC56550.1
CHAT domain-containing protein.
  
     0.490
SMC96646.1
Hypothetical protein.
  
     0.486
SMC53140.1
CHAT domain-containing protein.
  
     0.459
Your Current Organism:
Lentzea albidocapillata
NCBI taxonomy Id: 40571
Other names: ATCC 51859, CCUG 48294, CIP 104842, DSM 44073, IFO 15855, IMMIB D-958, IMSNU 21253, JCM 9732, L. albidocapillata, Lentzea albidicapillata, NBRC 100372, NBRC 15855, NRRL B-24057, Saccharothrix albidicapillata, Saccharothrix albidocapillata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.