STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMD21920.1Methyltransferase, FkbM family. (1179 aa)    
Predicted Functional Partners:
SMD21922.1
Glutamine synthetase.
       0.785
SMC69679.1
Hypothetical protein.
  
     0.772
SMD22202.1
Hypothetical protein.
  
     0.770
SMC68504.1
PPE family protein.
  
     0.766
SMD12594.1
Hypothetical protein.
  
     0.761
SMD07278.1
EspG family protein.
  
     0.757
SMC68497.1
EspG family protein.
  
     0.756
SMC68522.1
Protein of unknown function.
  
     0.754
SMD08852.1
Hypothetical protein.
  
     0.754
SMC67276.1
Hypothetical protein.
  
     0.747
Your Current Organism:
Lentzea albidocapillata
NCBI taxonomy Id: 40571
Other names: ATCC 51859, CCUG 48294, CIP 104842, DSM 44073, IFO 15855, IMMIB D-958, IMSNU 21253, JCM 9732, L. albidocapillata, Lentzea albidicapillata, NBRC 100372, NBRC 15855, NRRL B-24057, Saccharothrix albidicapillata, Saccharothrix albidocapillata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.