STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMD22437.1Protein of unknown function. (144 aa)    
Predicted Functional Partners:
SMD22435.1
Predicted arabinose efflux permease, MFS family.
  
    0.932
SMD21593.1
Hypothetical protein.
  
     0.771
SMD21561.1
Protein of unknown function.
  
     0.769
SMD21987.1
Hypothetical protein.
  
     0.769
SMC68000.1
Hypothetical protein.
  
     0.766
SMD21995.1
Hypothetical protein.
  
     0.766
SMD24799.1
Hypothetical protein.
  
     0.762
SMD13995.1
Hypothetical protein.
  
     0.759
SMC66911.1
Anti-sigma-D factor RsdA to sigma factor binding region.
  
     0.755
SMD15917.1
Hypothetical protein.
  
     0.753
Your Current Organism:
Lentzea albidocapillata
NCBI taxonomy Id: 40571
Other names: ATCC 51859, CCUG 48294, CIP 104842, DSM 44073, IFO 15855, IMMIB D-958, IMSNU 21253, JCM 9732, L. albidocapillata, Lentzea albidicapillata, NBRC 100372, NBRC 15855, NRRL B-24057, Saccharothrix albidicapillata, Saccharothrix albidocapillata
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