STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMD22689.1Transcriptional regulator, GntR family. (261 aa)    
Predicted Functional Partners:
SMD22688.1
Drug resistance transporter, EmrB/QacA subfamily; Belongs to the major facilitator superfamily.
       0.787
SMD22690.1
N,N'-diacetylchitobiose transport system substrate-binding protein.
   
   0.552
SMC65932.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.526
SMD17759.1
Predicted transcriptional regulator, ArsR family.
   
  
 0.500
SMD15735.1
AraC-type DNA-binding protein.
   
    0.499
SMD22691.1
N,N'-diacetylchitobiose transport system permease protein.
       0.496
SMD22693.1
beta-N-acetylhexosaminidase.
       0.496
SMD20537.1
LysR family transcriptional regulator, chromosome initiation inhibitor; Belongs to the LysR transcriptional regulatory family.
   
    0.491
SMD22692.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
       0.489
SMD24830.1
Transcriptional attenuator, LytR family.
   
    0.489
Your Current Organism:
Lentzea albidocapillata
NCBI taxonomy Id: 40571
Other names: ATCC 51859, CCUG 48294, CIP 104842, DSM 44073, IFO 15855, IMMIB D-958, IMSNU 21253, JCM 9732, L. albidocapillata, Lentzea albidicapillata, NBRC 100372, NBRC 15855, NRRL B-24057, Saccharothrix albidicapillata, Saccharothrix albidocapillata
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