STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMD23052.1Transcriptional regulator, TetR family. (188 aa)    
Predicted Functional Partners:
SMD23051.1
Heme-degrading monooxygenase HmoA.
 
    0.644
SMD23054.1
ABC-2 type transport system permease protein.
 
     0.602
SMD23053.1
ABC-2 type transport system ATP-binding protein.
       0.551
SMD23055.1
Signal transduction histidine kinase.
       0.548
SMD23056.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
       0.548
SMD23050.1
Tetratricopeptide repeat-containing protein.
       0.523
SMC97657.1
Hypothetical protein.
  
     0.472
SMC95237.1
Acetyltransferase (GNAT) family protein.
  
     0.444
Your Current Organism:
Lentzea albidocapillata
NCBI taxonomy Id: 40571
Other names: ATCC 51859, CCUG 48294, CIP 104842, DSM 44073, IFO 15855, IMMIB D-958, IMSNU 21253, JCM 9732, L. albidocapillata, Lentzea albidicapillata, NBRC 100372, NBRC 15855, NRRL B-24057, Saccharothrix albidicapillata, Saccharothrix albidocapillata
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.