STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMD24694.1Hypothetical protein. (97 aa)    
Predicted Functional Partners:
SMD23220.1
Nitrogen fixation protein NifU.
  
  
 0.817
SMD24696.1
Nucleotide-binding universal stress protein, UspA family.
       0.752
SMD24698.1
Hypothetical protein.
       0.694
prfA
Bacterial peptide chain release factor 1 (bRF-1); Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
     
 0.561
SMD01697.1
Cysteine desulfurase.
  
  
 0.559
SMD18248.1
Cysteine desulfurase.
  
  
 0.559
SMD23218.1
Fe-S cluster assembly ATP-binding protein.
  
 
 0.546
SMD23215.1
Fe-S cluster assembly protein SufB.
  
 
 0.542
SMD23216.1
Fe-S cluster assembly protein SufD.
  
 
 0.542
SMC52092.1
HEAT repeat-containing protein.
    
   0.509
Your Current Organism:
Lentzea albidocapillata
NCBI taxonomy Id: 40571
Other names: ATCC 51859, CCUG 48294, CIP 104842, DSM 44073, IFO 15855, IMMIB D-958, IMSNU 21253, JCM 9732, L. albidocapillata, Lentzea albidicapillata, NBRC 100372, NBRC 15855, NRRL B-24057, Saccharothrix albidicapillata, Saccharothrix albidocapillata
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