Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SMC77184.1 | SMC89157.1 | SAMN05660733_01569 | SAMN05660733_02403 | Regulatory protein, luxR family. | Signal transduction histidine kinase. | 0.992 |
SMC77184.1 | SMD25090.1 | SAMN05660733_01569 | SAMN05660733_07988 | Regulatory protein, luxR family. | Tetratricopeptide (TPR) repeat. | 0.698 |
SMC77184.1 | ribBA | SAMN05660733_01569 | SAMN05660733_07985 | Regulatory protein, luxR family. | 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.780 |
SMC89157.1 | SMC77184.1 | SAMN05660733_02403 | SAMN05660733_01569 | Signal transduction histidine kinase. | Regulatory protein, luxR family. | 0.992 |
SMC89157.1 | SMD10964.1 | SAMN05660733_02403 | SAMN05660733_04195 | Signal transduction histidine kinase. | Molecular chaperone HtpG. | 0.837 |
SMC89157.1 | SMD25090.1 | SAMN05660733_02403 | SAMN05660733_07988 | Signal transduction histidine kinase. | Tetratricopeptide (TPR) repeat. | 0.918 |
SMC89157.1 | htpG | SAMN05660733_02403 | SAMN05660733_03193 | Signal transduction histidine kinase. | Molecular chaperone HtpG; Molecular chaperone. Has ATPase activity. | 0.837 |
SMC89157.1 | ribBA | SAMN05660733_02403 | SAMN05660733_07985 | Signal transduction histidine kinase. | 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family. | 0.938 |
SMC89157.1 | rpoB | SAMN05660733_02403 | SAMN05660733_00875 | Signal transduction histidine kinase. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.540 |
SMD02842.1 | SMD25090.1 | SAMN05660733_03488 | SAMN05660733_07988 | Nitrogen regulatory protein P-II family; Belongs to the P(II) protein family. | Tetratricopeptide (TPR) repeat. | 0.720 |
SMD10964.1 | SMC89157.1 | SAMN05660733_04195 | SAMN05660733_02403 | Molecular chaperone HtpG. | Signal transduction histidine kinase. | 0.837 |
SMD10964.1 | SMD25090.1 | SAMN05660733_04195 | SAMN05660733_07988 | Molecular chaperone HtpG. | Tetratricopeptide (TPR) repeat. | 0.715 |
SMD22896.1 | SMD25090.1 | SAMN05660733_07020 | SAMN05660733_07988 | Hypothetical protein. | Tetratricopeptide (TPR) repeat. | 0.712 |
SMD22896.1 | rpoA | SAMN05660733_07020 | SAMN05660733_00916 | Hypothetical protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.998 |
SMD22896.1 | rpoB | SAMN05660733_07020 | SAMN05660733_00875 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.998 |
SMD25090.1 | SMC77184.1 | SAMN05660733_07988 | SAMN05660733_01569 | Tetratricopeptide (TPR) repeat. | Regulatory protein, luxR family. | 0.698 |
SMD25090.1 | SMC89157.1 | SAMN05660733_07988 | SAMN05660733_02403 | Tetratricopeptide (TPR) repeat. | Signal transduction histidine kinase. | 0.918 |
SMD25090.1 | SMD02842.1 | SAMN05660733_07988 | SAMN05660733_03488 | Tetratricopeptide (TPR) repeat. | Nitrogen regulatory protein P-II family; Belongs to the P(II) protein family. | 0.720 |
SMD25090.1 | SMD10964.1 | SAMN05660733_07988 | SAMN05660733_04195 | Tetratricopeptide (TPR) repeat. | Molecular chaperone HtpG. | 0.715 |
SMD25090.1 | SMD22896.1 | SAMN05660733_07988 | SAMN05660733_07020 | Tetratricopeptide (TPR) repeat. | Hypothetical protein. | 0.712 |
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