STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OTA21351.1Type VI secretion system protein VasA. (580 aa)    
Predicted Functional Partners:
OTA21350.1
Rhs element Vgr family protein.
 
    0.946
OTA19099.1
Hypothetical protein.
 
 
 0.890
OTA20647.1
Hypothetical protein.
 
 
 0.868
OTA19574.1
Hypothetical protein.
 
 
 0.868
OTA19105.1
Hypothetical protein.
 
  
 0.828
OTA19106.1
Hypothetical protein.
 
  
 0.827
OTA19098.1
Hypothetical protein.
 
  
 0.825
OTA19104.1
Hypothetical protein.
 
  
 0.807
OTA19102.1
Hypothetical protein.
 
  
 0.801
OTA19094.1
Putative type VI secretion system protein.
 
  
 0.794
Your Current Organism:
Xenorhabdus beddingii
NCBI taxonomy Id: 40578
Other names: ATCC 49542, DSM 4764, UQM 2871, X. beddingii, Xenorhabdus nematophila subsp. beddingi, Xenorhabdus nematophilus subsp. beddingii, strain Q58, strain Q58/1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.