Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OTA20896.1 | OTA20897.1 | Xbed_01155 | Xbed_01156 | Response regulator. | RNA-splicing ligase RtcB. | 0.880 |
OTA20896.1 | OTA20898.1 | Xbed_01155 | Xbed_01157 | Response regulator. | Nucleotidyltransferase. | 0.729 |
OTA20896.1 | kptA | Xbed_01155 | Xbed_01158 | Response regulator. | RNA 2'-phosphotransferase; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase. | 0.468 |
OTA20896.1 | rbn-2 | Xbed_01155 | Xbed_01154 | Response regulator. | Ribonuclease Z; Zinc phosphodiesterase, which has both exoribonuclease and endoribonuclease activities. | 0.773 |
OTA20897.1 | OTA20896.1 | Xbed_01156 | Xbed_01155 | RNA-splicing ligase RtcB. | Response regulator. | 0.880 |
OTA20897.1 | OTA20898.1 | Xbed_01156 | Xbed_01157 | RNA-splicing ligase RtcB. | Nucleotidyltransferase. | 0.895 |
OTA20897.1 | OTA20900.1 | Xbed_01156 | Xbed_01159 | RNA-splicing ligase RtcB. | Lysine transporter LysE. | 0.508 |
OTA20897.1 | deaD | Xbed_01156 | Xbed_01131 | RNA-splicing ligase RtcB. | Cold-shock DEAD-box protein A; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 0.464 |
OTA20897.1 | kptA | Xbed_01156 | Xbed_01158 | RNA-splicing ligase RtcB. | RNA 2'-phosphotransferase; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase. | 0.717 |
OTA20897.1 | rbn-2 | Xbed_01156 | Xbed_01154 | RNA-splicing ligase RtcB. | Ribonuclease Z; Zinc phosphodiesterase, which has both exoribonuclease and endoribonuclease activities. | 0.454 |
OTA20897.1 | rhlB | Xbed_01156 | Xbed_00925 | RNA-splicing ligase RtcB. | Cold-shock DEAD-box protein A; DEAD-box RNA helicase involved in RNA degradation. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. Belongs to the DEAD box helicase family. RhlB subfamily. | 0.464 |
OTA20897.1 | rhlE | Xbed_01156 | Xbed_00319 | RNA-splicing ligase RtcB. | Cold-shock DEAD-box protein A; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. | 0.464 |
OTA20897.1 | srmB | Xbed_01156 | Xbed_02458 | RNA-splicing ligase RtcB. | Cold-shock DEAD-box protein A; DEAD-box RNA helicase involved in the assembly of the 50S ribosomal subunit at low temperature. Exhibits RNA-stimulated ATP hydrolysis and RNA unwinding activity; Belongs to the DEAD box helicase family. SrmB subfamily. | 0.464 |
OTA20898.1 | OTA20896.1 | Xbed_01157 | Xbed_01155 | Nucleotidyltransferase. | Response regulator. | 0.729 |
OTA20898.1 | OTA20897.1 | Xbed_01157 | Xbed_01156 | Nucleotidyltransferase. | RNA-splicing ligase RtcB. | 0.895 |
OTA20898.1 | OTA20900.1 | Xbed_01157 | Xbed_01159 | Nucleotidyltransferase. | Lysine transporter LysE. | 0.570 |
OTA20898.1 | kptA | Xbed_01157 | Xbed_01158 | Nucleotidyltransferase. | RNA 2'-phosphotransferase; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase. | 0.795 |
OTA20898.1 | rbn-2 | Xbed_01157 | Xbed_01154 | Nucleotidyltransferase. | Ribonuclease Z; Zinc phosphodiesterase, which has both exoribonuclease and endoribonuclease activities. | 0.409 |
OTA20900.1 | OTA20897.1 | Xbed_01159 | Xbed_01156 | Lysine transporter LysE. | RNA-splicing ligase RtcB. | 0.508 |
OTA20900.1 | OTA20898.1 | Xbed_01159 | Xbed_01157 | Lysine transporter LysE. | Nucleotidyltransferase. | 0.570 |
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