STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OTA20665.1DNA-binding transcriptional activator PspC. (120 aa)    
Predicted Functional Partners:
OTA20666.1
Phage shock protein B.
 
 
 0.999
OTA20667.1
Phage shock protein PspA.
 
 
 0.998
OTA19309.1
Virulence sensor protein.
   
 
 0.988
OTA21906.1
Sensory histidine kinase.
  
 
 0.980
OTA21174.1
Multi-sensor hybrid histidine kinase.
  
 
 0.873
rcsC
Hybrid sensory histidine kinase BarA; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB.
   
 
 0.836
OTA19389.1
VanSD.
  
   0.783
OTA20668.1
Two-component response regulator PilR.
 
     0.768
OTA19941.1
Universal stress protein F.
  
     0.663
OTA19685.1
Sensor protein PhoQ, regulator of virulence determinants.
  
   0.631
Your Current Organism:
Xenorhabdus beddingii
NCBI taxonomy Id: 40578
Other names: ATCC 49542, DSM 4764, UQM 2871, X. beddingii, Xenorhabdus nematophila subsp. beddingi, Xenorhabdus nematophilus subsp. beddingii, strain Q58, strain Q58/1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.