Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OTA20527.1Membrane protein. (300 aa)    
Predicted Functional Partners:
OTA20526.1
Hypothetical protein.
       0.639
OTA20528.1
Membrane protein.
       0.628
OTA20159.1
Hypothetical protein.
  
     0.624
OTA20158.1
Membrane protein.
  
     0.558
OTA21419.1
Trifunctional nicotinamide-nucleotide adenylyltransferase/transcriptional regulator NadR.
     
  0.547
OTA20157.1
Membrane protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
     0.532
OTA20146.1
Lipoprotein.
  
     0.522
OTA19822.1
Membrane protein, Tfp pilus assembly, pilus retraction ATPase PilT.
  
     0.508
OTA19820.1
Conjugal transfer protein TraG.
  
     0.504
OTA18856.1
Hypothetical protein.
  
     0.488
Your Current Organism:
Xenorhabdus beddingii
NCBI taxonomy Id: 40578
Other names: ATCC 49542, DSM 4764, UQM 2871, X. beddingii, Xenorhabdus nematophila subsp. beddingi, Xenorhabdus nematophilus subsp. beddingii, strain Q58, strain Q58/1
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