STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OTA20562.1Phenylacetic acid degradation protein PaaD. (146 aa)    
Predicted Functional Partners:
OTA20558.1
3-ketosteroid-9-alpha-hydroxylase reductase subunit.
 
 
  0.974
OTA20557.1
phenylacetate-CoA oxygenase subunit PaaJ.
 
 
 0.965
OTA20556.1
Phenylacetic acid degradation protein.
 
 
 0.964
paaB
phenylacetate-CoA oxygenase subunit PaaB.
 
 
 0.963
OTA20564.1
phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
 
 0.954
OTA20554.1
phenylacetate-CoA oxygenase subunit PaaA.
 
 
 0.953
OTA20560.1
2- acetyl-CoA isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.949
OTA20561.1
Putative 3-hydroxyacyl-CoA dehydrogenase.
  
 0.929
OTA20553.1
Aldehyde dehydrogenase.
 
 
 0.859
OTA20559.1
Bifunctional 3-hydroxacyl-CoA dehydrogenase/acyl-CoA-binding protein; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.837
Your Current Organism:
Xenorhabdus beddingii
NCBI taxonomy Id: 40578
Other names: ATCC 49542, DSM 4764, UQM 2871, X. beddingii, Xenorhabdus nematophila subsp. beddingi, Xenorhabdus nematophilus subsp. beddingii, strain Q58, strain Q58/1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.