STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OTA20329.12-hydroxyhepta-2,4-diene-1,7-dioate isomerase. (210 aa)    
Predicted Functional Partners:
OTA20333.1
5-carboxymethyl-2-hydroxymuconate isomerase.
 
 
 0.928
OTA20330.1
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase.
 
  
 
0.926
OTA20332.1
3,4-dihydroxyphenylacetate 2,3-dioxygenase.
 
  
 0.917
OTA20331.1
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
  0.883
OTA20335.1
2-oxo-hepta-3-ene-1,7-dioic acid hydratase.
 
 
 0.844
OTA20336.1
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.766
OTA20696.1
Membrane protein.
  
 
  0.755
OTA19598.1
Membrane bound polyketide synthase.
  
 0.691
OTA20041.1
Isomerase/hydrolase.
 
  
 
0.647
OTA20240.1
NADPH dehydrogenase.
 
  
 0.595
Your Current Organism:
Xenorhabdus beddingii
NCBI taxonomy Id: 40578
Other names: ATCC 49542, DSM 4764, UQM 2871, X. beddingii, Xenorhabdus nematophila subsp. beddingi, Xenorhabdus nematophilus subsp. beddingii, strain Q58, strain Q58/1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.