STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OTA20370.1Von Willebrand factor, type A. (677 aa)    
Predicted Functional Partners:
OTA20367.1
Hypothetical protein.
 
 
 0.968
OTA20368.1
Hypothetical protein.
 
    0.959
OTA20369.1
ABC transporter, ATP-binding protein.
 
  
 0.936
OTA20372.1
Type III effector HopL1.
 
    0.927
OTA20373.1
Virulence factor SrfB.
 
     0.926
OTA20374.1
Virulence effector protein.
 
    0.926
smc_1
Chromosome partition protein Smc.
 
     0.923
OTA20375.1
Virulence effector protein.
 
     0.862
OTA21906.1
Sensory histidine kinase.
   
 0.844
OTA19309.1
Virulence sensor protein.
   
 0.844
Your Current Organism:
Xenorhabdus beddingii
NCBI taxonomy Id: 40578
Other names: ATCC 49542, DSM 4764, UQM 2871, X. beddingii, Xenorhabdus nematophila subsp. beddingi, Xenorhabdus nematophilus subsp. beddingii, strain Q58, strain Q58/1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.