Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OTA19398.1 | OTA20810.1 | Xbed_02444 | Xbed_01062 | Ferredoxin. | 2-oxoacid ferredoxin oxidoreductase. | 0.916 |
OTA19398.1 | rnfA | Xbed_02444 | Xbed_01806 | Ferredoxin. | Na -translocating NADH-quinone reductase subunit E; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. | 0.842 |
OTA19398.1 | rnfB | Xbed_02444 | Xbed_01805 | Ferredoxin. | Electron transport complex subunit RsxB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.448 |
OTA19398.1 | rnfC | Xbed_02444 | Xbed_01804 | Ferredoxin. | Electron transport complex subunit RsxC; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily. | 0.893 |
OTA19398.1 | rnfD | Xbed_02444 | Xbed_01803 | Ferredoxin. | Na -translocating NADH-quinone reductase subunit B; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family. | 0.841 |
OTA19398.1 | rnfE | Xbed_02444 | Xbed_01801 | Ferredoxin. | Electron transport complex RsxE subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. | 0.841 |
OTA19398.1 | rnfG | Xbed_02444 | Xbed_01802 | Ferredoxin. | Electron transport complex subunit G; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family. | 0.841 |
OTA20091.1 | nth | Xbed_01807 | Xbed_01800 | Membrane protein. | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. | 0.465 |
OTA20091.1 | rnfA | Xbed_01807 | Xbed_01806 | Membrane protein. | Na -translocating NADH-quinone reductase subunit E; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. | 0.742 |
OTA20091.1 | rnfB | Xbed_01807 | Xbed_01805 | Membrane protein. | Electron transport complex subunit RsxB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.734 |
OTA20091.1 | rnfC | Xbed_01807 | Xbed_01804 | Membrane protein. | Electron transport complex subunit RsxC; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily. | 0.555 |
OTA20091.1 | rnfD | Xbed_01807 | Xbed_01803 | Membrane protein. | Na -translocating NADH-quinone reductase subunit B; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family. | 0.496 |
OTA20091.1 | rnfE | Xbed_01807 | Xbed_01801 | Membrane protein. | Electron transport complex RsxE subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. | 0.475 |
OTA20091.1 | rnfG | Xbed_01807 | Xbed_01802 | Membrane protein. | Electron transport complex subunit G; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family. | 0.475 |
OTA20810.1 | OTA19398.1 | Xbed_01062 | Xbed_02444 | 2-oxoacid ferredoxin oxidoreductase. | Ferredoxin. | 0.916 |
OTA20810.1 | nuoI | Xbed_01062 | Xbed_00866 | 2-oxoacid ferredoxin oxidoreductase. | NADH-quinone oxidoreductase subunit I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | 0.916 |
OTA20810.1 | rnfA | Xbed_01062 | Xbed_01806 | 2-oxoacid ferredoxin oxidoreductase. | Na -translocating NADH-quinone reductase subunit E; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. | 0.747 |
OTA20810.1 | rnfB | Xbed_01062 | Xbed_01805 | 2-oxoacid ferredoxin oxidoreductase. | Electron transport complex subunit RsxB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.868 |
OTA20810.1 | rnfC | Xbed_01062 | Xbed_01804 | 2-oxoacid ferredoxin oxidoreductase. | Electron transport complex subunit RsxC; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily. | 0.799 |
OTA20810.1 | rnfD | Xbed_01062 | Xbed_01803 | 2-oxoacid ferredoxin oxidoreductase. | Na -translocating NADH-quinone reductase subunit B; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family. | 0.747 |
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