STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OTA19645.1Iron-regulated outer membrane virulence protein, TonB receptor family. (663 aa)    
Predicted Functional Partners:
OTA20052.1
Membrane spanning protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 0.966
OTA19240.1
TonB-like protein.
 
 0.915
OTA18883.1
Hypothetical protein.
  
 0.902
OTA20996.1
Hemin receptor.
  
 
 0.740
OTA21410.1
Biopolymer transport protein.
  
 
 0.718
OTA21409.1
Biopolymer transport protein.
  
 
 0.712
OTA19599.1
Amino acid adenylation.
  
  
 0.695
OTA21790.1
2,3-dihydro-2,3-dihydroxybenzoate synthetase.
 
  
 0.685
OTA18840.1
2,3-dihydro-2,3-dihydroxybenzoate synthetase.
 
  
 0.684
OTA19644.1
ABC transporter ATP-binding protein.
 
  
 0.679
Your Current Organism:
Xenorhabdus beddingii
NCBI taxonomy Id: 40578
Other names: ATCC 49542, DSM 4764, UQM 2871, X. beddingii, Xenorhabdus nematophila subsp. beddingi, Xenorhabdus nematophilus subsp. beddingii, strain Q58, strain Q58/1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.