STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OTA17425.1Pyridoxal-phosphate dependent enzyme. (323 aa)    
Predicted Functional Partners:
OTA21429.1
Aspartate kinase; In the C-terminal section; belongs to the homoserine dehydrogenase family.
  
 0.928
OTA18652.1
Aspartate kinase; In the C-terminal section; belongs to the homoserine dehydrogenase family.
  
 0.928
trpC
Bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Belongs to the TrpC family.
  
 0.860
ilvH
Acetolactate synthase small subunit.
  
 
 0.851
OTA19970.1
Putative alcohol-acetaldehyde dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.787
OTA21431.1
Threonine synthase.
  
 
 0.781
OTA19598.1
Membrane bound polyketide synthase.
  
 
 0.771
OTA20810.1
2-oxoacid ferredoxin oxidoreductase.
    
 0.763
OTA21874.1
Cysteine synthase A.
  
 
 0.755
OTA20886.1
Hypothetical protein.
 
 0.736
Your Current Organism:
Xenorhabdus beddingii
NCBI taxonomy Id: 40578
Other names: ATCC 49542, DSM 4764, UQM 2871, X. beddingii, Xenorhabdus nematophila subsp. beddingi, Xenorhabdus nematophilus subsp. beddingii, strain Q58, strain Q58/1
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