STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OTA16985.1DNA primase. (813 aa)    
Predicted Functional Partners:
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
    
 0.889
OTA19519.1
DNA primase.
    
 0.768
OTA19341.1
Terminase.
 
     0.759
OTA13993.1
Terminase.
 
     0.759
OTA21726.1
DNA primase.
 
  
 
0.675
OTA14840.1
Phage capsid protein.
 
     0.646
OTA15630.1
Phage capsid protein.
 
     0.645
OTA21730.1
Phage capsid protein.
 
     0.644
OTA19338.1
Head-tail adaptor.
 
     0.611
OTA15627.1
Head-tail adaptor.
 
     0.611
Your Current Organism:
Xenorhabdus beddingii
NCBI taxonomy Id: 40578
Other names: ATCC 49542, DSM 4764, UQM 2871, X. beddingii, Xenorhabdus nematophila subsp. beddingi, Xenorhabdus nematophilus subsp. beddingii, strain Q58, strain Q58/1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.