Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OTA16733.1Membrane protein. (113 aa)    
Predicted Functional Partners:
OTA15769.1
Structural protein.
  
     0.729
OTA19225.1
Phosphoglycerol transferase.
  
     0.724
OTA15770.1
Phage Mu F like family protein.
  
     0.724
OTA21400.1
Porin.
  
     0.705
OTA16732.1
Aldehyde-activating protein.
       0.655
OTA14323.1
Tail protein.
  
     0.652
OTA21257.1
Phage N-6-adenine-methyltransferase.
  
     0.630
OTA14014.1
Putative tail component of prophage.
  
     0.626
OTA19204.1
O-antigen ligase.
  
     0.625
OTA20385.1
Translation initiation factor IF-2.
  
     0.621
Your Current Organism:
Xenorhabdus beddingii
NCBI taxonomy Id: 40578
Other names: ATCC 49542, DSM 4764, UQM 2871, X. beddingii, Xenorhabdus nematophila subsp. beddingi, Xenorhabdus nematophilus subsp. beddingii, strain Q58, strain Q58/1
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