Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
OTA16743.1Integrase; Belongs to the 'phage' integrase family. (387 aa)    
Predicted Functional Partners:
OTA21257.1
Phage N-6-adenine-methyltransferase.
  
    0.541
OTA18975.1
2'-5' RNA ligase.
  
     0.495
OTA18810.1
Universal stress protein F.
  
     0.449
OTA15769.1
Structural protein.
  
     0.438
OTA21067.1
Bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
     
  0.429
OTA15770.1
Phage Mu F like family protein.
  
     0.421
OTA20535.1
Competence protein ComF.
   
    0.418
OTA18811.1
Universal stress protein F.
  
     0.415
OTA16742.1
Amino acid transporter.
       0.400
Your Current Organism:
Xenorhabdus beddingii
NCBI taxonomy Id: 40578
Other names: ATCC 49542, DSM 4764, UQM 2871, X. beddingii, Xenorhabdus nematophila subsp. beddingi, Xenorhabdus nematophilus subsp. beddingii, strain Q58, strain Q58/1
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