STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OTA16533.1Replication protein. (319 aa)    
Predicted Functional Partners:
OTA16532.1
Helicase.
  
  
 0.782
OTA16530.1
Hypothetical protein.
       0.773
OTA16531.1
Hypothetical protein.
       0.773
OTA16534.1
Hypothetical protein.
       0.773
OTA16528.1
Serine/threonine-protein phosphatase.
       0.757
OTA16529.1
Hypothetical protein.
       0.757
OTA16527.1
Protein ninG.
 
     0.745
OTA21462.1
Fimbrial adaptor, MrxG.
  
     0.662
OTA16535.1
Transcriptional regulator.
       0.601
OTA16525.1
Antiterminator.
       0.568
Your Current Organism:
Xenorhabdus beddingii
NCBI taxonomy Id: 40578
Other names: ATCC 49542, DSM 4764, UQM 2871, X. beddingii, Xenorhabdus nematophila subsp. beddingi, Xenorhabdus nematophilus subsp. beddingii, strain Q58, strain Q58/1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.